How to Read Your Own DNA Sequence From Raw Files
A practical walkthrough of going from FASTQ, BAM/CRAM, and VCF files to an actual nucleotide sequence you can read, translate, and check against the reads it came from.
Tag: samtools
2 posts
How to Use WGS Extract, and When to Use samtools Instead
A working guide to verifying, converting, and analyzing a personal 30x whole-genome file: checking the reference build, CRAM to BAM, coverage QC, variant calling, haplogroups, and microarray-format exports.